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American Focus > Blog > Tech and Science > How H5N1 Went from an Illness in Wild Birds to a Global Pandemic Threat
Tech and Science

How H5N1 Went from an Illness in Wild Birds to a Global Pandemic Threat

Last updated: June 23, 2025 5:50 am
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How H5N1 Went from an Illness in Wild Birds to a Global Pandemic Threat
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Bird flu, specifically the H5N1 subtype, has been a growing concern since March 2024 when it began infecting dairy cattle herds. This has raised alarm bells about the virus’s ability to jump from birds to mammals, including humans. In response to this threat, Scientific American has launched a three-part series called Science Quickly to delve into the latest research on bird flu and its potential risks to human health.

The first episode of the series takes us to the wild flocks where new strains of bird flu evolve and spread. At Norbury’s Landing, a strip of sandy beach on the Delaware Bay in New Jersey, Pamela McKenzie, a virus hunter from St. Jude Children’s Research Hospital, is collecting avian fecal samples. Every year in mid-May, she scours the beaches of Delaware Bay, looking for samples that might contain influenza viruses. This year, her team has already found positive samples for various bird flu viruses, though not the H5N1 strain yet.

Delaware Bay is a hotspot for avian influenza because it attracts large flocks of migratory shorebirds every year. These birds stop at the bay to feed on horseshoe crab eggs during the crabs’ mating season, providing the perfect opportunity for the virus to spread. The birds excrete the virus in their feces, which McKenzie and her team collect for surveillance purposes.

Robert Webster, a scientist at St. Jude, has been conducting influenza surveillance at Delaware Bay for the past 40 years. He explains that the birds excrete vast quantities of the virus in their feces, making it easy for researchers to track and study the virus without having to catch the birds themselves.

As the tide recedes and the birds flock to the beach to feed on horseshoe crab eggs, McKenzie follows closely behind, collecting samples of bird poop. Over the years, she has honed her skills in identifying different types of bird droppings, allowing her to target specific migratory bird species for sampling.

The work being done at Delaware Bay is crucial for monitoring the spread of avian influenza and understanding how new strains of the virus evolve in wild bird populations. By studying the dynamics of bird flu transmission in the wild, scientists hope to better prepare for potential outbreaks and protect human health. The study of avian influenza is a crucial aspect of understanding how these viruses can potentially jump from birds to humans and cause widespread disease. One of the key methods used to study avian influenza is collecting fecal samples from wild birds, particularly aquatic birds, which are known hosts of different influenza viruses.

Pamela McKenzie, a researcher in southern New Jersey, is shown collecting bird poop samples on the beach for testing for avian influenza. Fresh poop is preferred for sampling as it increases the likelihood of finding live virus that can be sequenced in the lab. The samples collected are part of a library of over 20,000 viruses at St. Jude’s research center, which includes various subtypes of avian influenza.

Avian influenza subtypes are classified based on two specific surface proteins, hemagglutinin and neuraminidase, denoted as H and N in flu names like H1N1 and H3N2. There are 144 possible combinations of H and N, and researchers have detected nearly every subtype in fecal samples collected at Delaware Bay.

Among these subtypes is H5N1, a highly pathogenic strain that has caused outbreaks in domestic poultry, leading to economic losses and public health concerns. The virus has infected millions of poultry and dairy cattle since 2022, raising alarm about the potential for a new “killer” strain to emerge.

Wild birds, particularly aquatic birds, are reservoirs of influenza viruses, categorized as low-pathogenic or highly pathogenic based on their ability to cause disease in chickens. The earliest records of high-path avian influenza date back to the late 1800s, with sporadic spillovers from wild to domestic birds occurring ever since.

In 1997, a three-year-old boy in Hong Kong died from H5N1 avian influenza, sparking concerns about the ability of animal influenza viruses to infect humans. This event led to a reevaluation of the relationship between animal and human influenza viruses, highlighting the need for continued surveillance and research to prevent future outbreaks.

Understanding the dynamics of avian influenza in wild birds is essential for predicting and preventing potential outbreaks in domestic animals and humans. By studying the genetic diversity of these viruses in wild bird populations, researchers can gain valuable insights into the potential risks and pathways for zoonotic transmission of avian influenza. In 1997, a deadly outbreak of the H5N1 virus struck Hong Kong, causing widespread panic and concern among public health officials. The virus, which originated in waterfowl, quickly spread to humans through traditional live bird markets, prompting the government to take drastic measures to contain the outbreak.

Keiji Fukuda, a member of the CDC at the time, was on the ground in Hong Kong working closely with local public health officials to combat the spread of the virus. The team made the difficult decision to cull all poultry in the markets and farms, effectively squashing the outbreak before it could escalate further. Six people tragically lost their lives during the outbreak, but there was no evidence of human-to-human transmission, a crucial factor in preventing a pandemic.

Since the 1997 outbreak, the H5N1 virus has continued to evolve and circulate globally, posing a persistent threat to human health. Scientists like Wendy Puryear have been monitoring the virus closely, tracking its mutations and changes over time. The virus, being an RNA virus, is prone to constant changes as it replicates, leading to a diverse range of H5N1 strains that could potentially infect different animals.

In recent years, H5N1 has been detected in a wide range of bird species across the world, as well as in various mammals such as coyotes, minks, and skunks. This expansion of the virus into new hosts raises concerns about its potential to adapt and spread more efficiently among different species. The virus’s ability to infect mammals is particularly worrisome, as it could increase the risk of zoonotic transmission to humans.

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As the H5N1 virus continues to evolve and spread, scientists and public health officials remain vigilant in monitoring its activity and preparing for potential outbreaks. The lessons learned from past experiences, such as the 1997 outbreak in Hong Kong, serve as a reminder of the importance of early detection and swift action in containing infectious diseases before they escalate into larger-scale pandemics. The spread of viruses among various mammal species is taking a concerning turn as new cases are being reported in unprecedented ways. In a recent interview, experts discussed the unexpected transmission of a virus among marine mammals in South America, particularly sea lions in Peru and Chile. The rapid spread of the virus resulted in the death of over 30,000 sea lions, raising concerns about direct transmission between animals.

Furthermore, the virus found its way to the Atlantic coast, infecting groups of dolphins, porpoises, and otters. This cross-species transmission raised alarm bells among scientists, who were previously unaware of such occurrences. The virus even made its way to dairy cattle in the United States, surprising researchers who are still investigating how it entered farms.

Experts believe that the virus may have been transmitted to dairy cows through wild birds, which serve as carriers of various low-path viruses. These viruses circulate among wild birds in North America and can lead to genetic reassortment, resulting in the emergence of new genotypes. The high-path H5N1 virus, which infected dairy cows, is believed to have originated from such genetic mixing.

The process of reassortment, where different influenza viruses co-infect a host and exchange genetic information, can potentially lead to the emergence of deadlier viruses. This has been the case with past influenza pandemics, which resulted from reassortment between viruses from different species.

To track the evolution of influenza viruses, researchers like Louise Moncla and Wendy Puryear are studying genetic changes in H5N1 using flu family tree models. These models help trace the movement of the virus between different host species and geographic areas, providing insight into its spread.

While wild birds play a crucial role in spreading influenza viruses, experts emphasize the need for continuous surveillance to understand how these viruses evolve in the wild. By monitoring wild birds and their migratory patterns, researchers can predict where the virus might spread next and take preventive measures to curb its transmission.

In conclusion, the recent cases of cross-species transmission of viruses highlight the importance of studying the dynamics of viral evolution and transmission. By closely monitoring wild birds and conducting surveillance, researchers can better prepare for potential outbreaks and prevent the spread of deadly viruses among different mammal species. Lisa is a dedicated scientist who spends a significant amount of time living in her truck and camper, alongside her trusty lab assistant, Jax, a loyal Labrador Retriever. The cozy camper is not just a living space for Lisa, but also a makeshift laboratory where she conducts her important research.

The camper is equipped with a small kitchen, bathroom, and a comfortable bed. However, Lisa has transformed a part of the camper into a functional lab bench. Here, she has all the necessary tools and equipment to process and analyze the poop samples she collects from shorebirds. The lab bench is stocked with protective gear, reagents, pipettes, well plates, and a PCR machine that can amplify DNA from the samples she collects.

Using this equipment, Lisa can quickly run a PCR test to detect flu and H5 viruses in the fecal samples. This real-time surveillance work allows her to determine the prevalence of flu in shorebirds almost instantly. By the time she is driving home, she already has valuable data on the viruses present in the birds she studied.

Throughout her time on the beach, Lisa collected and processed hundreds of fecal samples. These samples will later be transported to St. Jude’s main labs in Tennessee for further analysis and verification. This process is a significant improvement from the previous method, where researchers had to wait months to determine the virus subtypes present in the samples.

Despite the advances in real-time surveillance, Lisa realizes that she needs more data to fully understand the flu viruses in shorebirds. To identify the exact bird species responsible for the samples, she collaborates with local wildlife ecologists like Larry Niles. Using a bird-catching cannon, they capture and sample various shorebirds to collect additional data for analysis.

Larry Niles, who leads the Delaware Bay Shorebird Project, has been studying shorebirds for almost three decades. His team uses innovative methods like cannon nets to catch birds for research. With the help of researchers like Lisa and Pam, who are experts in virology, Larry can gain a better understanding of the health and ecology of shorebirds.

While Larry focuses on the ecological aspects of the birds, Lisa and Pam work diligently to uncover the mysteries of avian influenza viruses. By combining their expertise, they can provide a comprehensive picture of the viruses circulating in shorebird populations. This collaborative effort between ecologists and virologists is crucial for understanding and mitigating the risks posed by avian flu outbreaks in birds and potentially humans. Lisa Kercher, the director of laboratory operations for the Webby Lab group at St. Jude Children’s Research Hospital, is at the forefront of studying the ecology of birds and its connection to viruses. She believes that by understanding the ecology of both birds and viruses, we can work together to unravel the mysteries of how these viruses spread.

One of the key aspects of Lisa’s work is getting access to shorebirds directly to gather crucial information. By collecting samples straight from the birds, researchers can easily identify the species and track the viruses they may be carrying. This information is essential in understanding how viruses like H5N1 can potentially jump from birds to mammals.

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Lisa emphasizes the importance of studying migratory routes, known as flyways, where birds travel across vast distances. These flyways act as avian superhighways, facilitating the spread of viruses like H5N1. Lisa has traveled thousands of miles along the four main flyways in North America, conducting research in sites from Alberta, Canada, to northwest Tennessee.

The rapid movement of birds along these flyways increases the risk of spillover of avian viruses into domestic poultry farms. This has already been observed in dairy farms where the virus has spread to cattle. By monitoring the birds along the flyways, researchers can anticipate potential outbreaks and advise farmers on biosecurity measures to protect their livestock.

Lisa envisions a future where biosurveillance networks, like her mobile lab, are scaled up to create a comprehensive system for tracking influenza viruses. These satellite labs could relay genetic sequences to influenza trackers and farmers, providing real-time information on virus circulation in wild birds. This proactive approach could help farmers enhance their biosecurity measures and prevent outbreaks before they occur.

Despite the challenges of keeping up with the ever-evolving nature of viruses, Lisa remains optimistic about the potential for early detection of mutations that could make viruses more resistant to antivirals or better adapted to mammals. By staying vigilant and studying the clues left behind by birds, researchers like Lisa are working towards a better understanding of how viruses spread and mutate.

In conclusion, the work of virus detectors like Lisa is crucial in monitoring avian influenza and protecting both wildlife and domestic animals. By bridging the gap between ecologists and virologists, researchers can work together to stay one step ahead of these potentially dangerous viruses. Stay tuned for more updates on bird flu research in the next installment of this special series. The world of technology is constantly evolving, with new innovations and advancements being made every day. From smartphones to self-driving cars, the possibilities seem endless. One of the most exciting developments in recent years is the rise of artificial intelligence, or AI.

AI is the simulation of human intelligence in machines that are programmed to think and learn like humans. This technology has the potential to revolutionize countless industries, from healthcare to finance to transportation. With AI, machines can perform tasks that would normally require human intelligence, such as recognizing speech, making decisions, and even playing games.

One of the most well-known examples of AI is IBM’s Watson, a supercomputer that has the ability to answer questions posed in natural language. Watson made headlines in 2011 when it competed on the game show Jeopardy! and beat two former champions. Since then, Watson has been used in a variety of fields, including healthcare, finance, and customer service.

Another example of AI is self-driving cars, which use sensors and algorithms to navigate roads without human input. Companies like Tesla, Google, and Uber are all working on developing self-driving car technology, which has the potential to make roads safer and reduce traffic congestion.

In the healthcare industry, AI is being used to analyze medical images, predict patient outcomes, and even assist in surgical procedures. AI can quickly process vast amounts of data, allowing healthcare providers to make more informed decisions and provide better care to patients.

AI is also being used in the finance industry to detect fraud, automate trading, and provide personalized financial advice. By analyzing patterns in data, AI can help financial institutions make better decisions and improve customer service.

Despite the many benefits of AI, there are also concerns about its impact on jobs and privacy. Some fear that AI will lead to widespread job loss as machines take over tasks that were once done by humans. There are also concerns about the ethical implications of AI, such as bias in algorithms and the potential for misuse of data.

Overall, the rise of artificial intelligence represents a significant shift in the way we interact with technology. As AI continues to advance, it will be important for society to carefully consider the implications and ensure that this powerful technology is used responsibly. The world of technology is constantly evolving, with new innovations and advancements being made every day. One of the most exciting developments in recent years has been the rise of artificial intelligence (AI). AI is a branch of computer science that aims to create machines that can perform tasks that typically require human intelligence, such as visual perception, speech recognition, decision-making, and language translation.

One of the key areas where AI is making a significant impact is in the field of healthcare. AI-powered tools and technologies are revolutionizing the way medical professionals diagnose and treat patients, ultimately improving patient outcomes and reducing healthcare costs.

One of the most promising applications of AI in healthcare is in medical imaging. AI algorithms are being used to analyze medical images, such as X-rays, MRIs, and CT scans, and help radiologists detect and diagnose diseases more quickly and accurately. This can lead to earlier detection of conditions such as cancer, heart disease, and strokes, which in turn can improve patient outcomes and survival rates.

AI is also being used to personalize healthcare treatments. By analyzing vast amounts of patient data, AI algorithms can help doctors tailor treatments to individual patients based on their unique genetic makeup, medical history, and lifestyle factors. This can lead to more effective and targeted treatments, reducing the risk of adverse reactions and improving patient outcomes.

In addition to improving diagnosis and treatment, AI is also being used to streamline administrative tasks in healthcare. AI-powered chatbots and virtual assistants can help patients schedule appointments, refill prescriptions, and get answers to their medical questions more quickly and efficiently. This can free up healthcare professionals to focus on more complex tasks, ultimately improving patient care and satisfaction.

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However, despite the many benefits of AI in healthcare, there are also challenges and concerns that need to be addressed. One of the main challenges is ensuring that AI algorithms are accurate and reliable. Bias in AI algorithms can lead to incorrect diagnoses or treatment recommendations, which can have serious consequences for patients. It is crucial that AI systems are thoroughly tested and validated before being deployed in clinical settings.

Privacy and data security are also major concerns when it comes to AI in healthcare. The vast amounts of patient data that AI algorithms rely on must be protected from cyberattacks and breaches. Healthcare organizations must implement robust security measures to safeguard patient information and ensure compliance with data protection regulations.

Overall, AI has the potential to revolutionize healthcare and improve patient outcomes in ways we never thought possible. By harnessing the power of AI, medical professionals can provide more personalized, efficient, and effective care to patients, ultimately leading to a healthier and happier population. As AI continues to advance, it will be exciting to see how it transforms the healthcare industry in the years to come. There are several ways to approach this task. Here is one possible approach:

Title: The Benefits of Adopting a Plant-Based Diet

In recent years, there has been a growing trend towards plant-based diets as more and more people become aware of the health and environmental benefits of reducing their consumption of animal products. A plant-based diet is one that focuses on whole, unprocessed plant foods such as fruits, vegetables, whole grains, legumes, nuts, and seeds, while minimizing or eliminating the intake of animal products like meat, dairy, and eggs.

One of the primary benefits of adopting a plant-based diet is improved overall health. Numerous studies have shown that plant-based diets are associated with a lower risk of chronic diseases such as heart disease, diabetes, and certain types of cancer. Plant foods are rich in essential nutrients like vitamins, minerals, and antioxidants that support optimal health and help to prevent illness. Additionally, plant-based diets are typically lower in saturated fat and cholesterol, which can help to reduce the risk of heart disease and improve cholesterol levels.

Another benefit of a plant-based diet is weight management. Plant-based foods are generally lower in calories and higher in fiber than animal products, which can help to support weight loss and weight maintenance. Additionally, plant-based diets are often associated with improved digestion and gut health, as fiber-rich foods can help to promote regular bowel movements and support a healthy gut microbiome.

In addition to the health benefits, adopting a plant-based diet can also have positive effects on the environment. The production of animal products like meat and dairy is resource-intensive and contributes to greenhouse gas emissions, deforestation, and water pollution. By reducing our consumption of animal products and choosing plant-based alternatives, we can help to reduce our carbon footprint and lessen our impact on the planet.

Overall, there are many compelling reasons to consider adopting a plant-based diet. Whether you are looking to improve your health, manage your weight, or reduce your environmental impact, a plant-based diet can offer a wide range of benefits. By incorporating more plant foods into your diet and reducing your intake of animal products, you can support your health and well-being while also contributing to a more sustainable future for the planet. The world of technology is ever-evolving, with new innovations and advancements constantly changing the way we live and work. From smartphones to self-driving cars, the possibilities seem endless. One of the most exciting developments in recent years is the rise of artificial intelligence (AI) and machine learning.

AI and machine learning are subsets of computer science that focus on creating systems that can learn and adapt on their own. These systems are designed to analyze data, recognize patterns, and make decisions without human intervention. This technology has the potential to revolutionize industries ranging from healthcare to finance to transportation.

One of the most promising applications of AI and machine learning is in the field of healthcare. These technologies have the potential to improve patient outcomes, reduce costs, and streamline operations. For example, AI-powered diagnostic tools can analyze medical images and detect abnormalities that may be missed by human doctors. This can lead to earlier detection of diseases and more effective treatment plans.

In the financial industry, AI and machine learning are being used to detect fraud, predict market trends, and personalize customer experiences. By analyzing vast amounts of data, these systems can identify patterns and anomalies that may indicate fraudulent activity. This can help financial institutions protect their customers and minimize losses.

In the transportation sector, AI and machine learning are being used to develop self-driving cars and improve traffic flow. These technologies can analyze real-time data from sensors and cameras to navigate roads and make split-second decisions. This has the potential to reduce accidents, save lives, and alleviate traffic congestion.

Despite the many benefits of AI and machine learning, there are also concerns about their impact on jobs and privacy. As these technologies become more advanced, some fear that they may replace human workers in certain industries. Additionally, there are concerns about the potential for data breaches and misuse of personal information.

Overall, the rise of AI and machine learning represents an exciting and transformative time in the world of technology. These technologies have the potential to revolutionize industries, improve efficiency, and enhance our quality of life. As we continue to explore the possibilities of AI and machine learning, it is important to consider the ethical implications and ensure that these technologies are used responsibly for the benefit of society as a whole.

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